HL_9G06_014

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G06_014 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.0507

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9G06|1|B|C|726
9G06|1|B|G|727
9G06|1|B|A|728
9G06|1|B|A|729
9G06|1|B|G|730
9G06|1|B|G|731

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain O

Small ribosomal subunit protein uS15

Chain R

Small ribosomal subunit protein bS18

Chain U

Small ribosomal subunit protein bS21