HL_9G1Z_007

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

9G1Z|1|1|G|217, 9G1Z|1|1|A|218, 9G1Z|1|1|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_007 not in the Motif Atlas

Homologous match to HL_8CRE_007

Geometric discrepancy: 0.0601

The information below is about HL_8CRE_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9G1Z|1|1|G|215
9G1Z|1|1|U|216
9G1Z|1|1|G|217
9G1Z|1|1|A|218
9G1Z|1|1|G|219
9G1Z|1|1|A|220
9G1Z|1|1|A|221
9G1Z|1|1|U|222
9G1Z|1|1|C|223

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

Ribosomal 60S subunit protein L26B

Chain l

Ribosomal 60S subunit protein L4B