HL_9G1Z_036

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

9G1Z|1|1|U|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_036 not in the Motif Atlas

Homologous match to HL_8CRE_036

Geometric discrepancy: 0.118

The information below is about HL_8CRE_036

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9G1Z|1|1|G|1676
9G1Z|1|1|U|1677
9G1Z|1|1|U|1678
9G1Z|1|1|A|1679
9G1Z|1|1|U|1680
9G1Z|1|1|C|1681
9G1Z|1|1|U|1682
9G1Z|1|1|U|1683
9G1Z|1|1|U|1684

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 5

Ribosomal 60S subunit protein L22B

Chain z

Ribosomal protein L19