HL_9G1Z_060

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9G1Z|1|1|G|2870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_060 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.0801

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9G1Z|1|1|A|2869
9G1Z|1|1|G|2870
9G1Z|1|1|C|2871
9G1Z|1|1|A|2872
9G1Z|1|1|G|2873
9G1Z|1|1|A|2874
9G1Z|1|1|A|2875
9G1Z|1|1|U|2876

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AN

Rpl40bp

Chain q

Ribosomal 60S subunit protein L9B