HL_9G33_001

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

9G33|1|D2|A|7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G33_001 not in the Motif Atlas

Geometric match to HL_8G9Z_003

Geometric discrepancy: 0.3434

The information below is about HL_8G9Z_003

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9G33|1|D2|C|4
9G33|1|D2|G|5
9G33|1|D2|A|6
9G33|1|D2|A|7
9G33|1|D2|A|8
9G33|1|D2|G|9

Current chains

Chain D2

5' ETS

Nearby chains

Chain UH

U3 small nucleolar RNA-associated protein 8

Chain UI

U3 small nucleolar RNA-associated protein 9

Chain UQ

NET1-associated nuclear protein 1