HL_9G33_008

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGUAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G33_008 not in the Motif Atlas

Geometric match to HL_9DFE_020

Geometric discrepancy: 0.1798

The information below is about HL_9DFE_020

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9G33|1|D2|U|514
9G33|1|D2|G|515
9G33|1|D2|U|516
9G33|1|D2|A|517
9G33|1|D2|A|518
9G33|1|D2|A|519
9G33|1|D2|A|520
9G33|1|D2|G|521

Current chains

Chain D2

5' ETS

Nearby chains

Chain JP

Protein SOF1

Chain UT

U3 small nucleolar RNA-associated protein 20