HL_9G5E_011

3D structure

PDB id

9G5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

9G5E|1|A|C|1151, 9G5E|1|A|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G5E_011 not in the Motif Atlas

Geometric match to HL_5E08_001

Geometric discrepancy: 0.3618

The information below is about HL_5E08_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9G5E|1|A|C|1150
9G5E|1|A|C|1151
9G5E|1|A|A|1152
9G5E|1|A|C|1153
9G5E|1|A|A|1154
9G5E|1|A|G|1155

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain L

28S ribosomal protein S15, mitochondrial