HL_9G6J_005
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 9G6J|1|1|C|199
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G6J_005 not in the Motif Atlas
- Homologous match to HL_8P9A_117
- Geometric discrepancy: 0.049
- The information below is about HL_8P9A_117
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_01609.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
9G6J|1|1|U|193
9G6J|1|1|U|194
9G6J|1|1|G|195
9G6J|1|1|G|196
9G6J|1|1|A|197
9G6J|1|1|A|198
9G6J|1|1|C|199
9G6J|1|1|A|200
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 9
- Ribosomal 60S subunit protein L26B
- Chain AF
- Ribosomal 60S subunit protein L32
- Chain l
- Ribosomal 60S subunit protein L4B
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