HL_9G6J_010

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_010 not in the Motif Atlas

Homologous match to HL_8P9A_122

Geometric discrepancy: 0.052

The information below is about HL_8P9A_122

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9G6J|1|1|A|357
9G6J|1|1|G|358
9G6J|1|1|U|359
9G6J|1|1|G|360
9G6J|1|1|A|361
9G6J|1|1|U|362

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AK

Ribosomal protein L37

Chain AM

60S ribosomal protein L39

Chain l

Ribosomal 60S subunit protein L4B