HL_9G6J_020
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 9G6J|1|1|U|875, 9G6J|1|1|A|879, 9G6J|1|1|A|880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G6J_020 not in the Motif Atlas
- Homologous match to HL_8CRE_019
- Geometric discrepancy: 0.0585
- The information below is about HL_8CRE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
9G6J|1|1|A|872
9G6J|1|1|C|873
9G6J|1|1|G|874
9G6J|1|1|U|875
9G6J|1|1|G|876
9G6J|1|1|C|877
9G6J|1|1|A|878
9G6J|1|1|A|879
9G6J|1|1|A|880
9G6J|1|1|U|881
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AK
- Ribosomal protein L37
- Chain k
- 60S ribosomal protein L3
- Chain x
- Ribosomal 60S subunit protein L17B
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