HL_9G6J_039

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUAACAG

Length

7 nucleotides

Bulged bases

9G6J|1|1|C|1862

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_039 not in the Motif Atlas

Homologous match to HL_8CRE_041

Geometric discrepancy: 0.0735

The information below is about HL_8CRE_041

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9G6J|1|1|U|1858
9G6J|1|1|U|1859
9G6J|1|1|A|1860
9G6J|1|1|A|1861
9G6J|1|1|C|1862
9G6J|1|1|A|1863
9G6J|1|1|G|1864

Current chains

Chain 1

25S rRNA

Nearby chains

Chain z

Ribosomal protein L19