HL_9G6J_042
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9G6J|1|1|A|2116, 9G6J|1|1|A|2117, 9G6J|1|1|U|2118, 9G6J|1|1|A|2122
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G6J_042 not in the Motif Atlas
- Homologous match to HL_8P9A_157
- Geometric discrepancy: 0.0614
- The information below is about HL_8P9A_157
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9G6J|1|1|U|2113
9G6J|1|1|C|2114
9G6J|1|1|U|2115
9G6J|1|1|A|2116
9G6J|1|1|A|2117
9G6J|1|1|U|2118
9G6J|1|1|U|2119
9G6J|1|1|A|2120
9G6J|1|1|A|2121
9G6J|1|1|A|2122
9G6J|1|1|A|2123
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AK
- Ribosomal protein L37
- Chain j
- Ribosomal 60S subunit protein L2A
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