HL_9G6J_058

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9G6J|1|1|G|2870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_058 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.0689

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9G6J|1|1|A|2869
9G6J|1|1|G|2870
9G6J|1|1|C|2871
9G6J|1|1|A|2872
9G6J|1|1|G|2873
9G6J|1|1|A|2874
9G6J|1|1|A|2875
9G6J|1|1|U|2876

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AN

Rpl40bp

Chain q

Ribosomal 60S subunit protein L9B