HL_9G6J_059

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_059 not in the Motif Atlas

Homologous match to HL_8P9A_174

Geometric discrepancy: 0.077

The information below is about HL_8P9A_174

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9G6J|1|1|U|2892
9G6J|1|1|U|2893
9G6J|1|1|G|2894
9G6J|1|1|U|2895
9G6J|1|1|U|2896
9G6J|1|1|C|2897
9G6J|1|1|A|2898

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain k

60S ribosomal protein L3