HL_9G6J_105
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 9G6J|1|A|G|1588
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G6J_105 not in the Motif Atlas
- Homologous match to HL_8CRE_224
- Geometric discrepancy: 0.0741
- The information below is about HL_8CRE_224
- Detailed Annotation
- T-loop with 1 bulged base
- Broad Annotation
- T-loop
- Motif group
- HL_25307.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9G6J|1|A|G|1581
9G6J|1|A|U|1582
9G6J|1|A|C|1583
9G6J|1|A|A|1584
9G6J|1|A|U|1585
9G6J|1|A|C|1586
9G6J|1|A|A|1587
9G6J|1|A|G|1588
9G6J|1|A|C|1589
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain R
- Ribosomal 40S subunit protein S16A
- Chain U
- Ribosomal 40S subunit protein S19A
- Chain V
- Ribosomal 40S subunit protein S20
- Chain e
- Ribosomal 40S subunit protein S29A
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