HL_9G6J_110

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9G6J|1|PT|C|16, 9G6J|1|PT|G|19, 9G6J|1|PT|G|20, 9G6J|1|PT|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_110 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.161

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

9G6J|1|PT|C|13
9G6J|1|PT|A|14
9G6J|1|PT|G|15
9G6J|1|PT|C|16
9G6J|1|PT|C|17
9G6J|1|PT|U|18|||A
9G6J|1|PT|G|19
9G6J|1|PT|G|20
9G6J|1|PT|U|21
9G6J|1|PT|A|22
9G6J|1|PT|G|23

Current chains

Chain PT

tRNA-fMet

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AP

Ribosomal 60S subunit protein L42A

Chain s

Ribosomal 60S subunit protein L11B