HL_9G7C_020

3D structure

PDB id

9G7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of raiA ncRNA from Clostridium reveals a new RNA 3D fold

Experimental method

ELECTRON MICROSCOPY

Resolution

3.27 Å

Loop

Sequence

CGUAAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G7C_020 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.2672

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9G7C|5|A|C|158
9G7C|5|A|G|159
9G7C|5|A|U|160
9G7C|5|A|A|161
9G7C|5|A|A|162
9G7C|5|A|A|163
9G7C|5|A|G|164

Current chains

Chain A

raiA (224-MER)

Nearby chains