HL_9G8M_014

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

9G8M|1|L5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_014 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1057

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9G8M|1|L5|U|1317
9G8M|1|L5|C|1318
9G8M|1|L5|U|1319
9G8M|1|L5|U|1320
9G8M|1|L5|G|1321
9G8M|1|L5|A|1322
9G8M|1|L5|A|1323
9G8M|1|L5|A|1324
9G8M|1|L5|C|1325
9G8M|1|L5|A|1326

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L27a

Chain Le

60S ribosomal protein L32