HL_9G8M_031

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

9G8M|1|L5|G|2419, 9G8M|1|L5|U|2423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_031 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.1951

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9G8M|1|L5|A|2418
9G8M|1|L5|G|2419
9G8M|1|L5|C|2420
9G8M|1|L5|A|2421
9G8M|1|L5|G|2422
9G8M|1|L5|U|2423
9G8M|1|L5|U|2424

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19