HL_9G8M_052

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

9G8M|1|L5|A|4212, 9G8M|1|L5|C|4219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_052 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1611

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9G8M|1|L5|U|4208
9G8M|1|L5|C|4209
9G8M|1|L5|A|4210
9G8M|1|L5|A|4211
9G8M|1|L5|A|4212
9G8M|1|L5|C|4213
9G8M|1|L5|G|4214
9G8M|1|L5|G|4215
9G8M|1|L5|U|4216
9G8M|1|L5|A|4217
9G8M|1|L5|A|4218
9G8M|1|L5|C|4219
9G8M|1|L5|G|4220

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29