HL_9G8M_059

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9G8M|1|L5|G|4473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_059 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.1585

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9G8M|1|L5|A|4472
9G8M|1|L5|G|4473
9G8M|1|L5|C|4474
9G8M|1|L5|A|4475
9G8M|1|L5|G|4476
9G8M|1|L5|A|4477
9G8M|1|L5|A|4478
9G8M|1|L5|U|4479

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40