HL_9G8M_084

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9G8M|1|S2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_084 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.2104

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

9G8M|1|S2|C|462
9G8M|1|S2|C|463
9G8M|1|S2|A|464
9G8M|1|S2|A|465
9G8M|1|S2|G|466
9G8M|1|S2|G|467

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6