HL_9G8M_098

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9G8M|1|S2|A|1253

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_098 not in the Motif Atlas

Homologous match to HL_8C3A_217

Geometric discrepancy: 0.2875

The information below is about HL_8C3A_217

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9G8M|1|S2|G|1245
9G8M|1|S2|A|1246
9G8M|1|S2|C|1247
9G8M|1|S2|U|1248
9G8M|1|S2|C|1249
9G8M|1|S2|A|1250
9G8M|1|S2|A|1251
9G8M|1|S2|C|1252
9G8M|1|S2|A|1253
9G8M|1|S2|C|1254

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20