HL_9G8M_101

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9G8M|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_101 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1933

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9G8M|1|S2|G|1366
9G8M|1|S2|U|1367
9G8M|1|S2|U|1368
9G8M|1|S2|A|1369
9G8M|1|S2|A|1370
9G8M|1|S2|U|1371
9G8M|1|S2|U|1372
9G8M|1|S2|C|1373

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SR

40S ribosomal protein S17