HL_9G8M_103

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

9G8M|1|S2|U|1463

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_103 not in the Motif Atlas

Homologous match to HL_8P9A_220

Geometric discrepancy: 0.4577

The information below is about HL_8P9A_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

9G8M|1|S2|C|1460
9G8M|1|S2|G|1461
9G8M|1|S2|U|1462
9G8M|1|S2|U|1463
9G8M|1|S2|C|1464
9G8M|1|S2|A|1465
9G8M|1|S2|G|1466

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sg

Receptor of activated protein C kinase 1