HL_9G8M_106
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 9G8M|1|S2|A|1663, 9G8M|1|S2|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G8M_106 not in the Motif Atlas
- Homologous match to HL_8C3A_225
- Geometric discrepancy: 0.4716
- The information below is about HL_8C3A_225
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01609.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
9G8M|1|S2|G|1658
9G8M|1|S2|U|1659
9G8M|1|S2|C|1660
9G8M|1|S2|A|1661
9G8M|1|S2|U|1662
9G8M|1|S2|A|1663
9G8M|1|S2|A|1664
9G8M|1|S2|G|1665
9G8M|1|S2|C|1666
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain SQ
- 40S ribosomal protein S16
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S19
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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