HL_9G8M_110

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUUUA

Length

6 nucleotides

Bulged bases

9G8M|1|X|A|82, 9G8M|1|X|U|83, 9G8M|1|X|U|84, 9G8M|1|X|U|85

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_110 not in the Motif Atlas

Geometric match to HL_8P9A_134

Geometric discrepancy: 0.2258

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

9G8M|1|X|U|81
9G8M|1|X|A|82
9G8M|1|X|U|83
9G8M|1|X|U|84
9G8M|1|X|U|85
9G8M|1|X|A|86

Current chains

Chain X

CrPV-IRES RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SO

40S ribosomal protein S14

Chain Sc

40S ribosomal protein S28