HL_9G8O_025

3D structure

PDB id

9G8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 40S ribosome bound by a SKI238-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9G8O|1|S2|U|1300, 9G8O|1|S2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8O_025 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.1555

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9G8O|1|S2|A|1295
9G8O|1|S2|U|1296
9G8O|1|S2|U|1297
9G8O|1|S2|G|1298
9G8O|1|S2|A|1299
9G8O|1|S2|U|1300
9G8O|1|S2|A|1301
9G8O|1|S2|G|1302
9G8O|1|S2|C|1303
9G8O|1|S2|U|1304

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin