3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GFT_004 not in the Motif Atlas
Homologous match to HL_5J7L_004
Geometric discrepancy: 0.2268
The information below is about HL_5J7L_004
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

9GFT|1|0|C|186
9GFT|1|0|G|187
9GFT|1|0|C|188
9GFT|1|0|A|189
9GFT|1|0|A|190
9GFT|1|0|G|191

Current chains

Chain 0
16S ribosomal RNA

Nearby chains

Chain u
Small ribosomal subunit protein bS20

Coloring options:


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