HL_9GFT_006

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9GFT|1|0|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0954

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GFT|1|0|G|259
9GFT|1|0|G|260
9GFT|1|0|U|261
9GFT|1|0|A|262
9GFT|1|0|A|263
9GFT|1|0|C|264
9GFT|1|0|G|265
9GFT|1|0|G|266
9GFT|1|0|C|267

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS17

Chain u

Small ribosomal subunit protein bS20