3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGUGAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GFT_024 not in the Motif Atlas
Homologous match to HL_5J7L_023
Geometric discrepancy: 0.1595
The information below is about HL_5J7L_023
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

9GFT|1|0|U|1076
9GFT|1|0|G|1077
9GFT|1|0|U|1078
9GFT|1|0|G|1079
9GFT|1|0|A|1080
9GFT|1|0|A|1081

Current chains

Chain 0
16S ribosomal RNA

Nearby chains

Chain 1
Small ribosomal subunit protein uS2
Chain 4
Small ribosomal subunit protein uS5

Coloring options:


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