HL_9GFT_046

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_046 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1338

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9GFT|1|AA|A|320
9GFT|1|AA|A|321
9GFT|1|AA|C|322
9GFT|1|AA|U|323
9GFT|1|AA|G|324
9GFT|1|AA|A|325
9GFT|1|AA|G|326
9GFT|1|AA|A|327
9GFT|1|AA|C|328
9GFT|1|AA|A|329
9GFT|1|AA|C|330
9GFT|1|AA|G|331
9GFT|1|AA|G|332
9GFT|1|AA|U|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

Small ribosomal subunit protein bS16

Chain AS

Small ribosomal subunit protein bS20