HL_9GFT_051

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_051 not in the Motif Atlas

Homologous match to HL_5J7L_205

Geometric discrepancy: 0.1217

The information below is about HL_5J7L_205

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9GFT|1|AA|C|522
9GFT|1|AA|A|523
9GFT|1|AA|G|524
9GFT|1|AA|C|525
9GFT|1|AA|C|526
9GFT|1|AA|G|527

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain w

messenger RNA

Chain z

Small ribosomal subunit protein uS12