HL_9GFT_052

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

9GFT|1|AA|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_052 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1169

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GFT|1|AA|G|617
9GFT|1|AA|C|618
9GFT|1|AA|U|619
9GFT|1|AA|C|620
9GFT|1|AA|A|621
9GFT|1|AA|A|622
9GFT|1|AA|C|623

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS4

Chain AO

Small ribosomal subunit protein bS16