HL_9GFT_053
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GFT_053 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.0917
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9GFT|1|AA|C|689
9GFT|1|AA|G|690
9GFT|1|AA|G|691
9GFT|1|AA|U|692
9GFT|1|AA|G|693
9GFT|1|AA|A|694
9GFT|1|AA|A|695
9GFT|1|AA|A|696
9GFT|1|AA|U|697
9GFT|1|AA|G|698
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain A1
- Small ribosomal subunit protein bS21
- Chain AG
- Small ribosomal subunit protein uS7
- Chain AV
- Large subunit ribosomal RNA; LSU rRNA
- Chain y
- Small ribosomal subunit protein uS11
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