HL_9GFT_075

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

9GFT|1|AV|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_075 not in the Motif Atlas

Homologous match to HL_5J7L_136

Geometric discrepancy: 0.1366

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9GFT|1|AV|G|123
9GFT|1|AV|G|124
9GFT|1|AV|A|125
9GFT|1|AV|A|126
9GFT|1|AV|A|127
9GFT|1|AV|C|128

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ax

Large ribosomal subunit protein bL34