HL_9GFT_083

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9GFT|1|AV|G|329, 9GFT|1|AV|A|330, 9GFT|1|AV|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_083 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1339

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9GFT|1|AV|G|327
9GFT|1|AV|U|328
9GFT|1|AV|G|329
9GFT|1|AV|A|330
9GFT|1|AV|C|331
9GFT|1|AV|A|332
9GFT|1|AV|G|333
9GFT|1|AV|C|334
9GFT|1|AV|C|335

Current chains

Chain AV

23S RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4

Chain Ap

Large ribosomal subunit protein uL24