HL_9GFT_103

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_103 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1436

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9GFT|1|AV|G|1281
9GFT|1|AV|U|1282
9GFT|1|AV|G|1283
9GFT|1|AV|A|1284
9GFT|1|AV|A|1285
9GFT|1|AV|A|1286
9GFT|1|AV|A|1287
9GFT|1|AV|G|1288
9GFT|1|AV|C|1289

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ai

Large ribosomal subunit protein bL17

Chain An

Large ribosomal subunit protein uL22

Chain Av

Large ribosomal subunit protein bL32