HL_9GFT_107

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9GFT|1|AV|A|1453, 9GFT|1|AV|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_107 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.4296

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9GFT|1|AV|C|1451
9GFT|1|AV|G|1452
9GFT|1|AV|A|1453
9GFT|1|AV|C|1454
9GFT|1|AV|G|1455
9GFT|1|AV|G|1456
9GFT|1|AV|U|1457
9GFT|1|AV|U|1458
9GFT|1|AV|G|1459

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ai

Large ribosomal subunit protein bL17