HL_9GFT_120

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9GFT|1|AV|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_120 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0942

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9GFT|1|AV|G|1949
9GFT|1|AV|G|1950
9GFT|1|AV|U|1951
9GFT|1|AV|A|1952
9GFT|1|AV|A|1953
9GFT|1|AV|G|1954
9GFT|1|AV|U|1955
9GFT|1|AV|U|1956
9GFT|1|AV|C|1957

Current chains

Chain AV

23S RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain Af

Large ribosomal subunit protein uL14