HL_9GFT_137

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9GFT|1|AV|G|2751, 9GFT|1|AV|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_137 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1742

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9GFT|1|AV|C|2745
9GFT|1|AV|U|2746
9GFT|1|AV|G|2747
9GFT|1|AV|A|2748
9GFT|1|AV|A|2749
9GFT|1|AV|A|2750
9GFT|1|AV|G|2751
9GFT|1|AV|C|2752
9GFT|1|AV|A|2753
9GFT|1|AV|U|2754
9GFT|1|AV|C|2755
9GFT|1|AV|U|2756
9GFT|1|AV|A|2757
9GFT|1|AV|A|2758
9GFT|1|AV|G|2759

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ab

Large ribosomal subunit protein uL6

Chain Ae

Large ribosomal subunit protein uL13

Chain Az

Large ribosomal subunit protein bL36A