HL_9GFT_161

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9GFT|1|N|U|546, 9GFT|1|N|A|547, 9GFT|1|N|G|548, 9GFT|1|N|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_161 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.1879

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9GFT|1|N|G|543
9GFT|1|N|C|544
9GFT|1|N|U|545
9GFT|1|N|U|546
9GFT|1|N|A|547
9GFT|1|N|G|548
9GFT|1|N|G|549
9GFT|1|N|C|550

Current chains

Chain N

23S RNA

Nearby chains

Chain W

Large ribosomal subunit protein uL13

Chain e

Large ribosomal subunit protein bL21