HL_9GFT_172

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9GFT|1|N|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_172 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.2896

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GFT|1|N|C|1064
9GFT|1|N|U|1065
9GFT|1|N|U|1066
9GFT|1|N|A|1067
9GFT|1|N|G|1068
9GFT|1|N|A|1069
9GFT|1|N|A|1070
9GFT|1|N|G|1071
9GFT|1|N|C|1072
9GFT|1|N|A|1073
9GFT|1|N|G|1074

Current chains

Chain N

23S RNA

Nearby chains

Chain V

50S ribosomal protein L11