HL_9GFT_184

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9GFT|1|N|A|1616, 9GFT|1|N|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_184 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.0895

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9GFT|1|N|C|1612
9GFT|1|N|G|1613
9GFT|1|N|A|1614
9GFT|1|N|C|1615
9GFT|1|N|A|1616
9GFT|1|N|C|1617
9GFT|1|N|A|1618
9GFT|1|N|G|1619

Current chains

Chain N

23S RNA

Nearby chains

Chain f

Large ribosomal subunit protein uL22

Chain p

Large ribosomal subunit protein bL34

Chain s

VemP nascent chain