HL_9GFT_189
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9GFT|1|N|A|1780, 9GFT|1|N|U|1781, 9GFT|1|N|U|1782, 9GFT|1|N|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GFT_189 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.0972
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
9GFT|1|N|U|1777
9GFT|1|N|U|1778
9GFT|1|N|U|1779
9GFT|1|N|A|1780
9GFT|1|N|U|1781
9GFT|1|N|U|1782
9GFT|1|N|A|1783
9GFT|1|N|A|1784
9GFT|1|N|A|1785
9GFT|1|N|A|1786
9GFT|1|N|A|1787
Current chains
- Chain N
- 23S RNA
Nearby chains
- Chain P
- Large ribosomal subunit protein uL2
- Chain p
- Large ribosomal subunit protein bL34
- Chain s
- VemP nascent chain
Coloring options: