HL_9GFT_197

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9GFT|1|N|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_197 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1701

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9GFT|1|N|C|2248
9GFT|1|N|U|2249
9GFT|1|N|G|2250
9GFT|1|N|G|2251
9GFT|1|N|G|2252
9GFT|1|N|G|2253
9GFT|1|N|C|2254
9GFT|1|N|G|2255
9GFT|1|N|G|2256

Current chains

Chain N

23S RNA

Nearby chains

Chain M

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L16

Chain j

Large ribosomal subunit protein bL27