HL_9GFT_198

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9GFT|1|N|A|2268, 9GFT|1|N|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_198 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.096

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9GFT|1|N|C|2264
9GFT|1|N|U|2265
9GFT|1|N|A|2266
9GFT|1|N|A|2267
9GFT|1|N|A|2268
9GFT|1|N|G|2269
9GFT|1|N|A|2270
9GFT|1|N|G|2271
9GFT|1|N|U|2272
9GFT|1|N|A|2273
9GFT|1|N|A|2274
9GFT|1|N|C|2275
9GFT|1|N|G|2276

Current chains

Chain N

23S RNA

Nearby chains

Chain Z

50S ribosomal protein L16

Chain j

Large ribosomal subunit protein bL27