HL_9GFT_199

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_199 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.2177

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9GFT|1|N|G|2304
9GFT|1|N|U|2305
9GFT|1|N|C|2306
9GFT|1|N|G|2307
9GFT|1|N|G|2308
9GFT|1|N|A|2309
9GFT|1|N|C|2310
9GFT|1|N|A|2311
9GFT|1|N|U|2312

Current chains

Chain N

23S RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL5