HL_9GFT_208

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_208 not in the Motif Atlas

Homologous match to HL_5J7L_197

Geometric discrepancy: 0.1068

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9GFT|1|N|C|2658
9GFT|1|N|G|2659
9GFT|1|N|A|2660
9GFT|1|N|G|2661
9GFT|1|N|A|2662
9GFT|1|N|G|2663

Current chains

Chain N

23S RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL6