HL_9GGR_085

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9GGR|1|AV|G|386

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GGR_085 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2021

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9GGR|1|AV|A|382
9GGR|1|AV|C|383
9GGR|1|AV|A|384
9GGR|1|AV|C|385
9GGR|1|AV|G|386
9GGR|1|AV|U|387
9GGR|1|AV|G|388
9GGR|1|AV|G|389
9GGR|1|AV|U|390
9GGR|1|AV|A|391
9GGR|1|AV|U|392

Current chains

Chain AV

23S ribosomal RNA

Nearby chains

Chain As

Large ribosomal subunit protein bL28